PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g004110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 226aa    MW: 25808.3 Da    PI: 7.6367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g004110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000151951632
                      HHHHHHHHHHHHHHHHHHHCTSCCC........ CS
               HLH  6 nerErrRRdriNsafeeLrellPkas......k 32
                      + +E++RR+ +++  ++L +l+P+        +
  Sopen10g004110.1 19 KDVEKNRRNYMKNLCNQLFSLIPSTHhsqetmG 51
                      689*********************543555550 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-41748IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEGCRRSSSA PVGVKLERKD VEKNRRNYMK NLCNQLFSLI PSTHHSQETM GLQDKIKSSE  60
IKLEKKKIHL EELSRMSGRK RPKSANSTNG PSPSTESSSS PQIQFHEMGP NMVVVLINGL  120
YNIATFNNII RLCHDEGVEV VYTNFTLNGN SMLQISHETK INMSSTMELR AANLCDKLKE  180
LLHGKSHDNE LESQLYLWDY IVEYELLKGY DVEFLPSTSH NPNMYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055436.11e-168PREDICTED: uncharacterized protein LOC107002017
TrEMBLK4CY021e-149K4CY02_SOLLC; Uncharacterized protein
STRINGSolyc10g008250.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427